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CRlncRNA annotation file: download.

[column number:label] Heading - Description

[1:A] Tag label of lncrna.

[2:B] Tissue cancer classification based on tissue type.

[3:C] Cancer type cancer detailed type described in articles.

[4:D] lncRNA lncrna name.

[5:E] Expression up means upregulated in cancer tissues, down means downregulated in cancer tissues.

[6:F] Onco/TS - Onco means the lncrna promotes cancer progression, TS means the lncrna inhibits cancer progression.

[7:G] EMT + means the lncrna promotes cancer cell EMT, - means the lncrna inhibits cancer cell EMT.

[8:H] Pathway the pathway lncrna involved with.

[9:I] Binding factor the gene/factor that directly binding to the lncrna, +/-in front of the factor/gene means the gene/factor regulates lncrna; +/- after the factor/gene means lncrna regulates the gene/factor.

[10:J] Interaction gene there exists regulatory relationship between gene/factor and lncrna, +/-in front of the factor/gene means the gene/factor regulates lncrna; +/- after the factor/gene means lncrna regulates the gene/factor.

[11:K] Proliferation + means the lncrna promotes cancer cell proliferation, - means the lncrna inhibits cancer cell proliferation.

[12:L] Migration + means the lncrna promotes cancer cell migration, - means the lncrna inhibits cancer cell migration.

[13:M] Metastasis + means the lncrna promotes cancer cell metastasis, - means the lncrna inhibits cancer cell metastasis.

[14:N] Invasion + means the lncrna promotes cancer cell invasion, - means the lncrna inhibits cancer cell invasion.

[15:O] Apoptosis + means the lncrna promotes cancer cell apoptosis, - means the lncrna inhibits cancer cell apoptosis.

[16:P] Prognosis + means the lncrna expression is positively correlated with patient survival time, - means the lncrna expression is negatively correlated with patient survival time.

[16:P] PMID the PMID number of the article.

lncRNAs in cancer hallmarks:

Cancer hallmarks   Proliferation   Migration   Metastasis   Invasion
Apoptosis   Prognosis   EMT

CRlncRNA TCGA expression file: download.

Dataset_ID Data_Source Cancer_Type Description
TCGA-BRCA TCGA BRCA Breast invasive carcinoma
TCGA-KIRC TCGA KIRC Kidney renal clear cell carcinoma
TCGA-THCA TCGA THCA Thyroid carcinoma
TCGA-LUAD TCGA LUAD Lung adenocarcinoma
TCGA-PRAD TCGA PRAD Prostate adenocarcinoma
TCGA-LIHC TCGA LIHC Liver hepatocellular carcinoma
TCGA-HNSC TCGA HNSC Head and neck squamous cell carcinoma
TCGA-STAD TCGA STAD Stomach adenocarcinoma
TCGA-KIRP TCGA KIRP Kidney renal papillary cell carcinoma
TCGA-KICH TCGA KICH Kidney chromophobe
TCGA-BLCA TCGA BLCA Bladder urothelial carcinoma
TCGA-LUSC TCGA LUSC Lung squamous cell carcinoma
TCGA-UCEC TCGA UCEC Uterine corpus endometrioid carcinoma
TCGA-CESC TCGA CESC Cervical squamous cell carcinoma and endocervical adenocarcinoma