LOC100287225

Gene basic information

symbol LINC01630
name long intergenic non-protein coding RNA 1630
location 18q21.2
alias_symbol LOC100287225
alias_name
Tissuecolorectum,
Cancercolorectal cancer,


Description

LOC100287225 is not only expressed in the intestinal tissue, but has also been misregulated during tumorigenesis. Moreover, the relative expression level of LOC100287225 RNA is significantly lower in tumor tissues compared with adjacent tumor-free tissues. The RNA expression level of LOC100287225 does not show significant correlation with clinical characteristics (1).


Cancer related information

download as excel csv txt

LncRNA tissue cancer type expression level oncogene/suppress gene pathway binding gene/factor associated gene/factor proliferation apoptosis migration EMT invasion metastasis prognosis tag PMID
0 LOC100287225 colorectum colorectal cancer down / 27062707

Expression profile

adipose adrenal brain breast colon heart kidney leukocyte liver lung lymph node ovary prostate skeletal muscle testis thyroid tissue 0.0 0.2 0.4 0.6 0.8 1.0 fpkm 0.0 0.1 1.0 0.1 0.1 0.0 0.1 0.1 0.0 0.1 0.1 0.1 0.1 0.1 0.3 0.1 LOC100287225

Expression profile in human body map

TCGA-BLCA TCGA-BRCA TCGA-CESC TCGA-HNSC TCGA-KICH TCGA-KIRC TCGA-KIRP TCGA-LIHC TCGA-LUAD TCGA-LUSC TCGA-PRAD TCGA-STAD TCGA-THCA TCGA-UCEC tissue 0.000 0.005 0.010 0.015 0.020 0.025 0.030 fpkm LOC100287225 type normal tumor

Expression profile in TCGA


Genomic feature visualization


Sequence

External link



Literature

[1]. Kazemzadeh M, Safaralizadeh R, Feizi MA, Ravanbakhsh R, Somi MH, et al. (2016). LOC100287225, novel long intergenic non-coding RNA, misregulates in colorectal cancer. Cancer Biomark 16(3): 499-505. link pubmed



© Bioinformatics Group of XTBG