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treRNA

Gene basic information

symbol TRERNA1
name translation regulatory long non-coding RNA 1
location 20q13.13
alias_symbol ncRNA-a7|treRNA
alias_name translational regulatory long non-coding RNA
Tissueliver,
Cancerhepatic cancer,

Description

LncRNA treRNA is negatively correlated with miR-190a expression level in hepatocellular carcinoma (HCC) tissues. After the miR-190 inhibitor (anti-190) is transfected into HCC cells, there are significantly increased expression level of treRNA. Inhibition of EMT via miR-190a mediates treRNA silencing in HCC cells (1).

Cancer related information

download as excel csv txt

LncRNA tissue cancer type expression level oncogene/suppress gene pathway binding gene/factor associated gene/factor proliferation apoptosis migration EMT invasion metastasis prognosis tag PMID
0 treRNA liver hepatic cancer / / miR-190a- 26608035

Expression profile

adipose adrenal brain breast colon heart kidney leukocyte liver lung lymph node ovary prostate skeletal muscle testis thyroid tissue 0.00 0.02 0.04 0.06 0.08 0.10 fpkm 0.0 0.0 0.0 0.0 0.1 0.0 0.0 0.0 0.0 0.1 0.0 0.0 0.0 0.0 0.1 0.0 treRNA

Expression profile in human body map

TCGA-BLCA TCGA-BRCA TCGA-CESC TCGA-HNSC TCGA-KICH TCGA-KIRC TCGA-KIRP TCGA-LIHC TCGA-LUAD TCGA-LUSC TCGA-PRAD TCGA-STAD TCGA-THCA TCGA-UCEC tissue 0.0000 0.0025 0.0050 0.0075 0.0100 0.0125 0.0150 0.0175 fpkm treRNA type normal tumor

Expression profile in TCGA

Genomic feature visualization

Sequence

External link

entrez_id 100887755
ucsc_id
Ensembl_gene_id ENSG00000231265
HGNC_id HGNC:44307
Omim_id
cosmic
lncrnadb LOC100887755

Literature

[1]. Wang X, Ren Y, Yang X, Xiong X, Han S, et al. (2015). miR-190a inhibits epithelial-mesenchymal transition of hepatoma cells via targeting the long non-coding RNA treRNA. FEBS Lett 589(24 Pt B): 4079-87. link pubmed

© Bioinformatics Group of XTBG